Researchers Produce Smallest Data Recorder Made of Microbes

A sample bottle containing Escherichia coli bacteria is seen at the Health Protection Agency in north London. (Reuters)
A sample bottle containing Escherichia coli bacteria is seen at the Health Protection Agency in north London. (Reuters)
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Researchers Produce Smallest Data Recorder Made of Microbes

A sample bottle containing Escherichia coli bacteria is seen at the Health Protection Agency in north London. (Reuters)
A sample bottle containing Escherichia coli bacteria is seen at the Health Protection Agency in north London. (Reuters)

Researchers at Columbia University Medical Center (CUMC) have converted a natural bacterial immune system into a microscopic data recorder, laying the groundwork for a new class of technologies that use bacterial cells for everything from disease diagnosis to environmental monitoring.

According to the German news agency (dpa), the researchers modified an ordinary laboratory strain of the ubiquitous human gut microbe Escherichia coli, enabling the bacteria to not only record their interactions with the environment, but also time-stamp the events.

Harris Wang, assistant professor in the Department of Pathology and Cell Biology and Systems Biology at CUMC said that such bacteria, swallowed by a patient, might be able to record the changes they experience through the whole digestive tract, yielding an unprecedented view of previously inaccessible phenomena.

Wang said this system is a natural biological memory device, reported phys.org website.

From an engineering perspective that is actually quite nice, because it is already a system that has been honed through evolution to be really great at storing information, he added.

To build their microscopic recorder, the research team modified a piece of DNA called a plasmid, giving it the ability to create more copies of itself in the bacterial cell in response to an external signal.



'Lungs of the Earth': the Indonesians Fighting for Peatland

Indonesia has more tropical peatland than any country, but it is also quickly losing this poorly understood ecosystem. STR / AFP
Indonesia has more tropical peatland than any country, but it is also quickly losing this poorly understood ecosystem. STR / AFP
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'Lungs of the Earth': the Indonesians Fighting for Peatland

Indonesia has more tropical peatland than any country, but it is also quickly losing this poorly understood ecosystem. STR / AFP
Indonesia has more tropical peatland than any country, but it is also quickly losing this poorly understood ecosystem. STR / AFP

Indonesian environmentalist Pralensa steered his boat through a shallow canal in the marshy peatlands near his village, an environment he fears may soon disappear.

His oar stirred up rich organic material in the brackish water, evidence of the layers of plant matter that make peatlands vital carbon dioxide stores and key to biodiversity, AFP said.

Indonesia has more tropical peatland than any other country, but it is also quickly losing this poorly understood ecosystem.

That affects local residents and wildlife but also has global impacts, because converted peatland can release vast quantities of planet-warming carbon dioxide.

Pralensa worries a similar fate awaits much of the swampy peatland around his village of Lebung Itam in South Sumatra.

Locals say palm oil firm Bintang Harapan Palma has already begun digging canals to drain the peatlands for planting.

"We protested... we told them this is a community-managed area," said Pralensa, who, like many Indonesians, uses a single name.

"According to them, they already have rights to this land."

Bintang Harapan Palma did not respond to AFP's request for comment.

Peatlands are an in-between place -- seemingly neither water nor land -- an environment that slows plant decomposition and forms carbon-rich peat.

Covering just three percent of the world's surface, they hold an estimated 44 percent of all soil carbon.

Indonesia's peatlands are home to endangered orangutans, as well as economically important fish species. They also help prevent flooding and drought, lower local temperatures and minimize saltwater intrusion.

For Pralensa, peatlands are no less than a "spiritual bond".

"From the moment that we exist, that we're born, we are aware of this peatland. We encounter it every moment of every day," the 44-year-old said.

Catastrophic fires

Indonesia's peatland has long been converted for agriculture, drained of the water that is its lifeblood, with severe consequences.

Dry peat is highly flammable, and fire can smoulder underground and reignite seemingly at will.

The blazes sparked calls for action, including a moratorium on new peatland concessions.

Government regulations adopted the following year banned several damaging activities, including burning and drying out peatland.

The environment ministry did not respond to questions submitted by AFP.

"Weak oversight and law enforcement in Indonesia allow the exploitation of peatlands to continue," said Wahyu Perdana at peatland preservation NGO Pantau Gambut.

And fires still happen "almost every year," said Rohman, a farmer in Bangsal village, around two hours west of Lebung Itam.

Like Lebung Itam, it is ringed by plantations on converted peatland.

Bangsal residents could once rely on vast wetlands to feed their distinctive buffalo, which dive beneath the water to graze.

Fish traps supplied additional income, along with small rice paddies.

'We must protect nature'

Plantation infrastructure prevents water from subsiding properly when the rains end, complicating rice planting.

And then there is the seasonal haze.

"It's difficult to do anything" when it descends, said Rohman, with visibility sometimes dropping to just a few meters.

Everything from "economic activity to children playing and learning is very disrupted".

Rohman, 53, was one of several plaintiffs from Bangsal and Lebung Itam who filed a landmark lawsuit over the fires.

They argued three companies with nearby timber plantations on peatland bore legal responsibility for the health, economic and social impacts of local fires.

Filing the suit was not an easy decision, said Bangsal schoolteacher Marda Ellius, who alleges a company named in the case offered her money and help for her family if she withdrew.

"I kept thinking that, from the beginning, my goal here was for the environment, for many people," she said.

"I chose to continue."

AFP could not reach the companies named in the suit. Major firm Asia Pulp & Paper (APP), which buys from the three companies, did not respond.

This month, a local court rejected the suit, saying the plaintiffs lacked standing.

"The pain cannot be described," plaintiff Muhammad Awal Gunadi said of the ruling.

"It was tough because we were facing corporations.

The group has pledged to appeal, and Bangsal's villagers are lobbying local government for a new designation to protect their remaining peatland.

Healthy peat is "like the lungs of the Earth," said Bangsal resident and buffalo farmer Muhammad Husin.

"Hopefully, if we protect nature, nature will also protect us."