ISIS and Al-Qaeda Wage ‘Small’ Wars on Margins of Civil Strife

US-backed Syrian Democratic Forces fighters stand guard next to men waiting to be screened after being evacuated out of the last territory held by ISIS, near Baghouz, eastern Syria, Feb. 22, 2019. (AP)
US-backed Syrian Democratic Forces fighters stand guard next to men waiting to be screened after being evacuated out of the last territory held by ISIS, near Baghouz, eastern Syria, Feb. 22, 2019. (AP)
TT
20

ISIS and Al-Qaeda Wage ‘Small’ Wars on Margins of Civil Strife

US-backed Syrian Democratic Forces fighters stand guard next to men waiting to be screened after being evacuated out of the last territory held by ISIS, near Baghouz, eastern Syria, Feb. 22, 2019. (AP)
US-backed Syrian Democratic Forces fighters stand guard next to men waiting to be screened after being evacuated out of the last territory held by ISIS, near Baghouz, eastern Syria, Feb. 22, 2019. (AP)

Civil wars and strife often witness smaller wars and conflict between parties fighting in the same camp. This took place, for example, between Christian parties during the 1975-90 Lebanese civil when the Kataeb and National Liberal Party waged bloody battles for dominance. They culminated in the defeat of the Tigers Militia – the armed wing of the NLP – and establishment of the Lebanese Forces.

In Afghanistan, Mujahideen factions fought against the communist rule in Kabul and its Russian supporters. No sooner had the Mujahideen claimed victory that they turned against each other in 1992, turning Kabul into rubble. Their war only ended with the rise of the Taliban, which swallowed or nearly swallowed them up whole.

In Algeria, the 1990s saw the emergence of dozens of armed groups that fought against the rulers in order to oust and replace them with an “Islamic government.” They were battling the Algerian army, while the factions were also fighting each other in order to “unite their banner.” The infighting helped the Algerian security forces to turn the tide in their favor and defeat all of the armed groups.

The above introduction leads to the question: What sort of relationship is in store in the future between the rival ISIS and al-Qaeda organizations?

Both organizations follow the same ideology even though ISIS was formed years after al-Qaeda.

ISIS is the product of the 2003 US invasion of Iraq. Al-Qaeda, meanwhile, was born in the late 1980s in Afghanistan during a time of resistance against the Red Army and communists. In the 1990s, the Egyptian al-Jihad organization merged with al-Qaeda, leading to the establishment of the so-called Qaidat al-Jihad group, which was predominantly comprised of Egyptian members.

The rift between ISIS and al-Qaeda happened after the eruption of the Syrian civil conflict in 2011. At the time, al-Qaeda in Iraq was known as the Islamic State in Iraq. The rift was the culmination of clashes between al-Qaeda’s Iraqi branch, led by Jordan’s Abu Musab al-Zarqawi, and several Sunni factions that were fighting the American “occupiers”. These factions refused the dictates of Zarqawi, who wanted to impose the authority of his organization over all Iraqi factions.

Zarqawi’s actions prompted several Sunni groups to work with the Americans and Iraqi government instead of joining an organization that was leading the country towards sectarian civil war. The Sunni resistance, or Sahwat as they would later be known, defeated al-Qaeda, forcing it to retreat from the confrontation. Command was given to Iraqi members, while the non-Iraqis took a backseat.

Zarqawi died in 2006. He was succeeded by Abu al-Hassan al-Muhajir (Abu Ayyoub al-Masri), another foreign leader of al-Qaeda. The organization was at the time, however, identified as Iraqi and operating under the name the Islamic State in Iraq, led by Abu Omar al-Baghdadi. He would be succeeded after his killing by Abu Bakr al-Baghdadi.

When the Syrian conflict erupted from peaceful protests against the regime of president Bashar Assad in 2011, Abu Bakr al-Baghdadi was quick to dispatch Syrian Abu Mohammad al-Julani to the country. Al-Julani was a leading member of al-Qaeda and worked for al-Baghdadi as part of the Islamic State in Iraq. In Syria, he was tasked with organizing an armed movement to act against the regime.

The Syrian conflict led to the fallout between al-Baghdadi and al-Julani. Al-Baghdadi wanted al-Julani to operate under his command in Syria. In 2013, the Islamic State in Iraq transformed to become the Islamic State of Iraq and the Levant after Syrian regime forces withdrew from the border with Iraq. Al-Baghdadi then declared that the Sykes–Picot border between the neighboring countries was no more.

Al-Julani, however, rebelled against his Iraqi leader, say the latter’s supporters. Al-Baghdadi’s supports showed no mercy to their adversaries, whether they were Iraqi or Syrian government soldiers, or civilians who were viewed as apostates or infidels, or even fighters from other Islamic organizations that did not swear allegiance to the “State”.

The al-Qaeda leadership tried to avert confrontation with al-Baghdadi. It sent some of its most prominent leaders to Syria to resolve the dispute or strengthen al-Julani should efforts fail to end the rift.

The Iraqi leader, however, did not forgive the Syrian for “betraying the cause.” Al-Baghdadi believed that al-Julani turned against him when he was transferred to Syria, where he formed the al-Nusra Front as an independent branch of al-Qaeda. This branch would answer directly to the al-Qaeda command based on the Afghanistan-Pakistan border, not the Iraqi leadership.

On the ground, ISIS swallowed the Syrian al-Qaeda branch whole. Its sweep of Syria was only stopped with the beginning of the operations of the US-led international coalition against al-Baghdadi’s organization in September 2014. This allowed al-Julani to catch his breath and rebuild the al-Nusra Front. Its operations became limited to northwestern Syria, the only region where al-Baghdadi’s fighters could not expand.

Al-Julani also waged small “civil” wars against extremist Islamic groups active in areas under his control. He succeeded through force and sometimes through dialogue to eliminate the majority of armed groups that were fighting independently against the regime. The groups that managed to escape began to work directly under the Turkish army and its intelligence after their forces secured vast areas of northwestern Syria (Idlib and Latakia), its north (Aleppo) and northeast (al-Raqqa).

ISIS was defeated militarily in Syria in spring 2019 and al-Baghdadi died in a US raid in the Idlib countryside later that year. ISIS retains a few cells that are trying to regroup under the command of their new leader Abu Ibrahim al‑Hashimi al‑Qurashi, but they are still weak and do not pose a serious threat to adversaries, whether in the Syrian regime or Hayat Tahrir al-Sham, which was established as a “successor” of the al-Nusra Front.

The ISIS collapse in Syria did not spell the end of clashes between the group and al-Qaeda. ISIS affiliates across the globe have pledged allegiance to their new leader and are active in combating “infidels and apostates” in various countries, such as Yemen, Somalia and Afghanistan, and the African Sahel. ISIS media boasts of these clashes and often reports on fighting between its members and al-Qaeda in the Sahel region.

There is no doubt that these small “civil wars” between ISIS and al-Qaeda may expand or become contained. The weakness of both organizations is the factor that will determine which way the fighting will go. The weakness does not allow them to wage a largescale confrontation that would end in the victory of one over the other and the “unification of banners”. The Armed Islamic Group of Algeria tried to do this in the 1990s and failed.

Another factor is that the balance of power does not favor one party over the other as it did in the past. Under al-Baghdadi, ISIS used to boast that it was ruling a “state” due to its control over large swathes of Syria and Iraq. This is no longer the case. Al-Qaeda, meanwhile, is now no more than an armed group that does not control a “state” or even an “emirate”. It is now at the command of the “owners of the land,” such as the Taliban in Afghanistan.

Both organizations appear at an impasse, meaning the competition between them and their terrorist attacks around the globe will continue for years to come, unless their leaders agree to unite forces.



From India-Pakistan to Iran and Ukraine, a New Era of Escalation

The Iron Dome, the Israeli air defense system, intercepts missiles fired from Iran, over Tel Aviv, Israel, 17 June 2025. (EPA)
The Iron Dome, the Israeli air defense system, intercepts missiles fired from Iran, over Tel Aviv, Israel, 17 June 2025. (EPA)
TT
20

From India-Pakistan to Iran and Ukraine, a New Era of Escalation

The Iron Dome, the Israeli air defense system, intercepts missiles fired from Iran, over Tel Aviv, Israel, 17 June 2025. (EPA)
The Iron Dome, the Israeli air defense system, intercepts missiles fired from Iran, over Tel Aviv, Israel, 17 June 2025. (EPA)

By Peter Apps

As India’s defense chief attended an international security conference in Singapore in May, soon after India and Pakistan fought what many in South Asia now dub “the four-day war”, he had a simple message: Both sides expect to do it all again.

It was a stark and perhaps counterintuitive conclusion: the four-day military exchange, primarily through missiles and drones, appears to have been among the most serious in history between nuclear-armed nations.

Indeed, reports from both sides suggest it took a direct intervention from US Secretary of State Marco Rubio to halt an escalating exchange of drones and rockets.

Speaking to a Reuters colleague in Singapore, however, Indian Chief of Defense Staff General Anil Chauhan denied either nation had come close to the “nuclear threshold”, describing a “lot of messaging” from both sides.

“A new space for conventional operations has been created and I think that is the new norm,” he said, vowing that New Delhi would continue to respond militarily to any militant attacks on India suspected to have originated from Pakistan.

How stable that "space" might be and how great the risk of escalation for now remains unclear. However, there have been several dramatic examples of escalation in several already volatile global stand-offs over the past two months.

As well as the “four-day” war between India and Pakistan last month, recent weeks have witnessed what is now referred to in Israel and Iran as their “12-day war”. It ended this week with a US-brokered ceasefire after Washington joined the fray with massive air strikes on Tehran’s underground nuclear sites.

Despite years of confrontation, Israel and Iran had not struck each other’s territory directly until last year, while successive US administrations have held back from similar steps.

As events in Ukraine have shown, conflict between major nations can become normalized at speed – whether that means “just” an exchange of drones and missiles, or a more existential battle.

More concerning still, such conflicts appear to have become more serious throughout the current decade, with plenty of room for further escalation.

This month, that included an audacious set of Ukrainian-organized drone strikes on long-range bomber bases deep inside Russian territory, destroying multiple aircraft which, as well as striking Ukraine, have also been responsible for carrying the Kremlin’s nuclear deterrent.

All of that is a far cry from the original Cold War, in which it was often assumed that any serious military clash – particularly involving nuclear forces or the nations that possessed them – might rapidly escalate beyond the point of no return. But it does bring with it new risks of escalation.

Simmering in the background, meanwhile, is the largest and most dangerous confrontation of them all - that between the US and China, with US officials saying Beijing has instructed its military to be prepared to move against Taiwan from 2027, potentially sparking a hugely wider conflict.

As US President Donald Trump headed to Europe this week for the annual NATO summit, just after bombing Iran, it was clear his administration hopes such a potent show of force might be enough to deter Beijing in particular from pushing its luck.

“American deterrence is back,” US Defense Secretary Pete Hegseth told a Pentagon press briefing the morning after the air strikes took place.

Iran’s initial response of drones and missiles fired at a US air base in Qatar – with forewarning to the US that the fusillade was coming – appeared deliberately moderate to avoid further escalation.

Addressing senators at their confirmation hearing on Tuesday, America’s next top commanders in Europe and the Middle East were unanimous in their comments that the US strikes against Iran would strengthen Washington's hand when it came to handling Moscow and Beijing.

Chinese media commentary was more mixed. Han Peng, head of state-run China Media Group's North American operations, said the US had shown weakness to the world by not wanting to get dragged into the Iran conflict due to its “strategic contraction”.

Other social media posts talked of how vulnerable Iran looked, with nationalist commentator Hu Xijn warning: "If one day we have to get involved in a war, we must be the best at it."

LONG ARM OF AMERICA

On that front, the spectacle of multiple US B-2 bombers battering Iran’s deepest-buried nuclear bunkers - having flown all the way from the US mainland apparently undetected - will not have gone unnoticed in Moscow or Beijing.

Nor will Trump’s not so subtle implications that unless Iran backed down, similar weapons might be used to kill its Supreme Leader Ali Khamenei or other senior figures, wherever they might hide.

None of America’s adversaries have the ability to strike without warning in that way against hardened, deepened targets, and the B-2 – now being replaced by the more advanced B-21 – has no foreign equal.

Both are designed to penetrate highly sophisticated air defenses, although how well they would perform against cutting-edge Russian or Chinese systems would only be revealed in an actual conflict.

China’s effort at building something similar, the H-2, has been trailed in Chinese media for years – and US officials say Beijing is striving hard to make it work.

Both China and Russia have fifth-generation fighters with some stealth abilities, but none have the range or carrying capacity to target the deepest Western leadership or weapons bunkers with conventional munitions.

As a result, any Chinese or Russian long-range strikes – whether conventional or nuclear – would have to be launched with missiles that could be detected in advance.

Even without launching such weapons, however, nuclear powers have their own tools to deliver threats.

An analysis of the India-Pakistan “four-day war” in May done by the Stimson Center suggested that as Indian strikes became more serious on the third day of the war, Pakistan might have taken similar, deliberately visible steps to ready its nuclear arsenal to grab US attention and help conclude the conflict.

Indian newspapers have reported that a desperate Pakistan did indeed put pressure on the US to encourage India to stop, as damage to its forces was becoming increasingly serious, and threatening the government.

Pakistan denies that – but one of its most senior officers was keen to stress that any repeat of India’s strikes would bring atomic risk.

"Nothing happened this time," said the chairman of the Pakistani joint chiefs, General Sahir Shamshad Mirza, also speaking to Reuters at the Shangri-La dialogue in Singapore. "But you can't rule out any strategic miscalculation at any time."

For now, both sides have pulled back troops from the border – while India appears determined to use longer term strategies to undermine its neighbor, including withdrawing from a treaty controlling the water supplies of the Indus River, which Indian Prime Minister Modi said he now intends to dam. Pakistani officials have warned that could be another act of war.

DRONES AND DETERRENCE

Making sure Iran never obtains the leverage of a working atomic bomb, of course, was a key point of the US and Israeli air strikes. Trump and Israeli Prime Minister Benjamin Netanyahu agreed that the dangers of a government so hostile to Israel obtaining such a weapon would always be intolerable.

For years, government and private sector analysts had predicted Iran might respond to an assault on its nuclear facilities with attacks by its proxies across the Middle East, including on Israel from Hezbollah in Lebanon and Hamas in Gaza, as well as using thousands of missiles, drones and attack craft to block international oil exports through the Strait of Hormuz.

In reality, the threat of an overwhelming US military response – and hints of an accompanying switch of US policy to outright regime change or decapitation in Iran, coupled with the Israeli military success against Hezbollah and Hamas, appear to have forced Tehran to largely stand down.

What that means longer term is another question.

Flying to the Netherlands on Tuesday for the NATO summit, Trump appeared to be offering Iran under its current Shi'ite Muslim clerical rulers a future as a “major trading nation” providing they abandoned their atomic program.

The Trump administration is also talking up the success of its Operation ROUGH RIDER against the Iran-backed Houthi militia in Yemen.

Vice Admiral Bradley Cooper, selected as the new head of US Central Command, told senators the US military had bombed the Houthis for 50 days before a deal was struck in which the Houthis agreed to stop attacking US and other international shipping in the Red Sea.

But Cooper also noted that like other militant groups in the Middle East, the Houthis were becoming increasingly successful in building underground bases out of the reach of smaller US weapons, as well as using unmanned systems to sometimes overwhelm their enemies.

“The nature and character of warfare is changing before our very eyes,” he said.

Behind the scenes and sometimes in public, US and allied officials say they are still assessing the implications of the success of Ukraine and Israel in infiltrating large numbers of short-range drones into Russia and Iran respectively for two spectacular attacks in recent weeks.

According to Ukrainian officials, the drones were smuggled into Russia hidden inside prefabricated buildings on the back of trucks, with the Russian drivers unaware of what they were carrying until the drones were launched.

Israel’s use of drones on the first day of its campaign against Iran is even more unsettling for Western nations wondering what such an attack might look like.

Its drones were smuggled into Iran and in some cases assembled in secret there to strike multiple senior Iranian leaders and officials in their homes as they slept in the small hours of the morning on the first day of the campaign.

As they met in The Hague this week for their annual summit, NATO officials and commanders will have considered what they must do to build their own defenses to ensure they do not prove vulnerable to a similar attack.

Judging by reports in the Chinese press, military officials there are now working on the same.