Ties Between Al-Qaeda and the Taliban... Will ISIS benefit from the Rupture?

Taliban members are seen in Kabul after the drone strike that killed Zawahiri. (Reuters)
Taliban members are seen in Kabul after the drone strike that killed Zawahiri. (Reuters)
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Ties Between Al-Qaeda and the Taliban... Will ISIS benefit from the Rupture?

Taliban members are seen in Kabul after the drone strike that killed Zawahiri. (Reuters)
Taliban members are seen in Kabul after the drone strike that killed Zawahiri. (Reuters)

After having killed Al Qaeda leader Ayman al-Zawahiri with a drone that hit the home he had been hiding in Kabul, the United States has, to a large extent, finished avenging the 9/11 attacks.

The perpetrators were killed in bloody attacks, and Osama bin Laden was then killed by Navy SEALs in May 2011 in Pakistan. Khaled Sheikh Mohammed, the “mastermind” behind the attacks, remains in Guantanamo Bay after being arrested in Pakistan years ago. Many of the other perpetrators are either rotting there with him or were killed by the US.

But what does eliminating Zawahiri mean? This article tries to answer that question.

A contentious, complicated relationship
The first questions that come to mind ask what Zawahiri was doing in Kabul and whether his being there a year after the Taliban had returned to power, after the collapse of former President Ashraf Ghani’s government and the withdrawal of US forces, meant that an Al-Qaeda's return to the Afghan capital had been sanctioned by the Taliban.

As we all know, the US withdrew from Afghanistan after concluding the Doha Agreement with the Taliban during former President Donald Trump’s term and implementing it under Joe Biden. That agreement stipulated, among other things, that the Taliban would not allow terrorist organizations to use Afghan soil to plan or carry out attacks against any other country again.

The Taliban thus indirectly admitted that Al-Qaeda had used Afghanistan as a base from which it planned and implemented 9/11 and promised not to let that happen again after having “learned from the mistakes of the past.”

Taliban leaders have discussed learning from past mistakes a lot since returning to power. However, many are skeptical about whether the movement has actually learned its lesson after losing power for 20 years because it had harbored terrorist organizations using its territory to carry out attacks on other countries.

The skeptics point out that the Taliban has promised, for example, to allow girls to go back to school but has not done so thus far.

On the other hand, some have defended it, pointing to the fact that it has treated its former enemies well after they remained in the country despite Ghani fleeing, though it did not allow them to take part in forming the new regime in Kabul.

Regardless of whether girls are allowed back to school and how defeated rivals are treated, the international community and the US are primarily concerned with whether the country will become a sanctuary for terrorists like it had been when the Taliban first ruled in the 1990s.

In fact, several reports have discussed the prospect of an Al-Qaeda return to Afghanistan, but they cannot be confirmed in light of the Taliban’s muteness on the matter. US officials confirmed that Taliban officials had visited the safehouse where Zawahiri was killed, meaning that he had been under their protection, or at least a wing of the movement. Indeed, the ties between the two were never severed, especially in the east, where the Haqqani Network operates.

That does not mean that the leaders of this Network, who have prominent positions in Kabul, were protecting the Al-Qaeda chief in Kabul.

In truth, it is difficult to answer this question conclusively given the lack of evidence to either deny or confirm this claim, just like it had been impossible to ascertain whether bin Laden had taken permission from former Taliban leader Mullah Omar before launching the 9/11 attacks.

Who will succeed Zawahiri?
When bin Laden was killed in 2011, Zawahiri was swiftly chosen to succeed him, surprising no one. He had headed the Egyptian Islamic Jihad and was right beneath bin Laden in Al-Qaeda’s chain of command. The he men had been close since living together in Khartoum before being expelled from Sudan in 1996.

Today, the picture is far murkier. Much of Al-Qaeda’s top brass were killed, especially in Pakistan, Afghanistan and Syria. Among the most prominent leaders left is Saif al-Adl, an Egyptian Al-Qaeda official who had lived in Iran after he fled Afghanistan following the US invasion in 2001 and maintains ties with the Revolutionary Guards.

Nonetheless, Al-Qaeda might choose someone else, a figure who moved to Afghanistan to live under the new regime of the Taliban, as Zawahiri had done. Such a decision would allow it to avoid choosing someone totally controlled by Iranian intelligence like Saif al-Adl, if he indeed remains in Iran like others that it has harbored within the framework of deals it has concluded with Al-Qaeda.

Regardless of who becomes the next leader, Al-Qaeda has become a decentralized organization with no central command like that led by bin Laden in the 90s. The US war on terror forced Al-Qaeda to adapt and decentralize, and its various branches, from Yemen, to Africa to Syria, have operated independently of Zawahiri and the central command for years. This is not likely to change.

What about ISIS?
Al-Qaeda’s primary competitor, ISIS, has hit its rival hard over the past few years. Today, however, ISIS seems far worse off than Al-Qaeda. It lost its so-called state in Syria and Iraq, and it has become nothing more than dispersed small cells that launch attacks against Iraqi forces, Kurdish forces east of the Euphrates, and Syrian regime forces west of the Euphrates.

In Libya, where ISIS established an “Emirate,” it has been exterminated, with only a few cells operating in the south left. The same is true for their presence in Sinai after the Egyptian army launched a campaign against it for years. Its leader in the Sahel was killed only a few months after his most prominent competitor, the leader of Al-Qaeda in the region, was exterminated.

Its Khorasan branch remains the most active, but the major problem ISIS faces there are its clashes with the new rulers of Afghanistan, the Taliban, which is hosting their rivals, Al-Qaeda!



Career Diplomat Becomes the Face of Trump’s ‘America First’ Agenda at the UN

US Ambassador to the United Nations, Dorothy Shea (C), addresses a UN Security Council meeting called following a recent missile strike by Russia on a residential area in Ukraine, at the United Nations headquarters in New York, New York, USA, 08 April 2025. (EPA)
US Ambassador to the United Nations, Dorothy Shea (C), addresses a UN Security Council meeting called following a recent missile strike by Russia on a residential area in Ukraine, at the United Nations headquarters in New York, New York, USA, 08 April 2025. (EPA)
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Career Diplomat Becomes the Face of Trump’s ‘America First’ Agenda at the UN

US Ambassador to the United Nations, Dorothy Shea (C), addresses a UN Security Council meeting called following a recent missile strike by Russia on a residential area in Ukraine, at the United Nations headquarters in New York, New York, USA, 08 April 2025. (EPA)
US Ambassador to the United Nations, Dorothy Shea (C), addresses a UN Security Council meeting called following a recent missile strike by Russia on a residential area in Ukraine, at the United Nations headquarters in New York, New York, USA, 08 April 2025. (EPA)

The highest-ranking US representative now at the United Nations told Congress two years ago that Russia's invasion of Ukraine was "unprovoked" and "unjustified," urging UN members to condemn Moscow’s aggression and demand an end to the war.

In February, it was the same career diplomat, Dorothy Shea, who voiced the Trump administration's extraordinary decision to split with European allies and refuse to back a UN resolution blaming Russia for its invasion on the third anniversary of the war.

While it is typical for diplomats to stay on as US presidents — and their political parties — change, Shea's interim role has unexpectedly made her a face of the stunning US transition on the world stage, with President Donald Trump's "America First" approach increasingly upending the post-World War II international order.

Shea will be in place longer than expected after Trump's unusual decision last month to withdraw his nominee for UN ambassador, Rep. Elise Stefanik, from consideration because of a slim Republican House majority.

"I would say (Shea’s) position is unique. It is probably particularly unique in that because of the extraordinary change, not just from one administration to another, but really an era of US foreign policy, even when there were nuanced differences," said Phillip Reeker, the former acting assistant secretary of state for Europe. "The change in the vote that took place at the UN on the Russia-Ukraine war was really an inflection point in US policy."

A UN vote changes US messaging on Ukraine

On Feb. 24, the US joined Russia in voting against a European-backed Ukrainian resolution demanding an immediate withdrawal of Moscow's forces. A dueling US resolution noted "the tragic loss of life" and called for "a swift end to the conflict," but it didn't mention Moscow’s aggression as the Trump administration opened negotiations with Russia on a ceasefire.

"Continuing to engage in rhetorical rivalries in New York may make diplomats feel vindicated, but it will not save souls on the battlefield," Shea, 59, said at the time. "Let us prove to ourselves and to our citizens that we can come together and agree on the most basic principles. Let us show one another that the bold vision of peace that once pulled us out of hell can prevail."

The message was a shocking retreat for the US in the 193-member UN General Assembly, whose resolutions are not legally binding but are seen as a barometer of world opinion. It also reinforced the fears of some allies about what a second Trump presidency could mean for longstanding transatlantic partnerships — and whether the US could remain a bulwark against aggressors like Russia.

For Shea, it was another day at work. She has spent the last 30-plus years serving as a diplomat under both Republican and Democratic presidents — from Bill Clinton to Trump — carrying out their policies even if they were a departure from longstanding US positions.

"I don’t know what her personal views are on things. But administrations change, policies change. And your job as a diplomat is to advocate for those policies," said a former colleague and deputy US ambassador, Robert Wood, who recently retired.

The US mission to the UN declined to comment. The State Department did not immediately respond to an Associated Press request for comment.

The roots of a diplomat

Shea's work has included stints in South Africa, where she witnessed Nelson Mandela become the first democratically elected president, and Israel, where she worked on the Israeli-Palestinian peace process.

Shea grew up in the suburbs of Washington — her father a World War II veteran and her mother active in the local Japanese American friendship society. The experience of Japanese exchange students staying with her family over several summers and wanting to understand world events propelled her into international relations at the University of Virginia. After graduation, she scored a job offer with the US Foreign Service.

She worked her way up and in 2019 was tapped to be Trump's ambassador to Lebanon, where the soft-spoken diplomat made headlines for her criticism of the Hezbollah group. A Lebanese judge banned local and foreign media outlets from interviewing Shea for a year, saying her criticism of Hezbollah was seditious and a threat to social peace.

In 2023, Biden nominated Shea to become No. 2 at the UN.

The top US role at the UN — for now

It is unclear when Shea will hand off to a Senate-confirmed political appointee. Stefanik went through a confirmation hearing, but her nomination was pulled last month because her vote to advance Trump's agenda remains crucial to Republicans in the House. The GOP congresswoman was the fourth Trump nominee not to make it through the confirmation process.

Trump has made no mention of whom he would nominate to replace Stefanik and fill his last remaining Cabinet seat. Until then, Shea is at the helm at a critical moment for US foreign policy, selling big changes to dealing with both allies and adversaries and defending the administration's slashing of foreign assistance.

The White House recently proposed additional drastic cuts to the State Department, which would include eliminating funding for nearly all international organizations, such as the UN.

The proposal is highly preliminary but reflects the administration's isolationist view, which, along with funding uncertainties, poses a major challenge to the mandate and work of the UN.