New Genetic Analysis of Animals in Wuhan Market in 2019 May Help Find COVID-19’s Origin

This photo taken on July 21, 2015 shows racoon-dogs in their cages at a farm which breeds animals for fur in Zhangjiakou, in China's Hebei province. (AFP)
This photo taken on July 21, 2015 shows racoon-dogs in their cages at a farm which breeds animals for fur in Zhangjiakou, in China's Hebei province. (AFP)
TT

New Genetic Analysis of Animals in Wuhan Market in 2019 May Help Find COVID-19’s Origin

This photo taken on July 21, 2015 shows racoon-dogs in their cages at a farm which breeds animals for fur in Zhangjiakou, in China's Hebei province. (AFP)
This photo taken on July 21, 2015 shows racoon-dogs in their cages at a farm which breeds animals for fur in Zhangjiakou, in China's Hebei province. (AFP)

Scientists searching for the origins of COVID-19 have zeroed in on a short list of animals that possibly helped spread it to people, an effort they hope could allow them to trace the outbreak back to its source.

Researchers analyzed genetic material gathered from the Chinese market where the first outbreak was detected and found that the most likely animals were racoon dogs, civet cats and bamboo rats. The scientists suspect infected animals were first brought to the Wuhan market in late November 2019, which then triggered the pandemic.

Michael Worobey, one of the new study’s authors, said they found which sub-populations of animals might have transmitted the coronavirus to humans. That may help researchers pinpoint where the virus commonly circulates in animals, known as its natural reservoir.

"For example, with the racoon dogs, we can show that the racoon dogs that were (at the market) ... were from a sub-species that circulates more in southern parts of China," said Worobey, an evolutionary biologist at the University of Arizona. Knowing that might help researchers understand where those animals came from and where they were sold. Scientists might then start sampling bats in the area, which are known to be the natural reservoirs of related coronaviruses like SARS.

While the research bolsters the case that COVID-19 emerged from animals, it does not resolve the polarized and political debate over whether the virus instead emerged from a research lab in China.

Mark Woolhouse, a professor of infectious diseases at the University of Edinburgh, said the new genetic analysis suggested that the pandemic "had its evolutionary roots in the market" and that it was very unlikely COVID-19 was infecting people before it was identified at the Huanan market.

"It’s a significant finding and this does shift the dial more in favor of an animal origin," Woolhouse, who was not connected to the research, said. "But it is not conclusive."

An expert group led by the World Health Organization concluded in 2021 that the virus probably spread to humans from animals and that a lab leak was "extremely unlikely." WHO chief Tedros Adhanom Ghebreyesus later said it was "premature" to rule out a lab leak.

An AP investigation in April found the search for the COVID origins in China has gone dark after political infighting and missed opportunities by local and global health officials to narrow the possibilities.

Scientists say they may never know for sure where exactly the virus came from.

In the new study, published Thursday in the journal Cell, scientists from Europe, the US and Australia analyzed data previously released by experts at the Chinese Center for Disease Control and Prevention. It included 800 samples of genetic material Chinese workers collected on Jan. 1, 2020 from the Huanan seafood market, the day after Wuhan municipal authorities first raised the alarm about an unknown respiratory virus.

Chinese scientists published the genetic sequences they found last year, but did not identify any of the animals possibly infected with the coronavirus. In the new analysis, researchers used a technique that can identify specific organisms from any mixture of genetic material collected in the environment.

Worobey said the information provides "a snapshot of what was (at the market) before the pandemic began" and that genetic analyses like theirs "helps to fill in the blanks of how the virus might have first started spreading."

Woolhouse said the new study, while significant, left some critical issues unanswered.

"There is no question COVID was circulating at that market, which was full of animals," he said. "The question that still remains is how it got there in the first place."



Kashmir’s Saffron Growers Experiment with Indoor Farming as Climate Pressures Mount

Kashmiri villagers collect stigma from saffron flowers in Pampore, 19 km (12 miles) south of Srinagar.(Reuters)
Kashmiri villagers collect stigma from saffron flowers in Pampore, 19 km (12 miles) south of Srinagar.(Reuters)
TT

Kashmir’s Saffron Growers Experiment with Indoor Farming as Climate Pressures Mount

Kashmiri villagers collect stigma from saffron flowers in Pampore, 19 km (12 miles) south of Srinagar.(Reuters)
Kashmiri villagers collect stigma from saffron flowers in Pampore, 19 km (12 miles) south of Srinagar.(Reuters)

Tucked in a valley beneath the snow-capped Himalayas of the Indian Kashmir region is the town of Pampore, famed for its farms that grow the world's most expensive spice - the red-hued saffron.

This is where most of saffron is farmed in India, the world's second-largest producer behind Iran of the spice, which costs up to 325,000 rupees ($3,800) a kg (2.2 pounds) because it is so labor-intensive to harvest.

Come October, the crocus plants begin to bloom, covering the fields with bright purple flowers from which strands of fragrant red saffron are picked by hand, to be used in foods such as paella, and in fragrances and cloth dyes.

"I am proud to cultivate this crop," said Nisar Ahmad Malik, as he gathered flowers from his ancestral field.

But, while Malik has stuck to traditional farming, citing the "rich color, fragrance and aroma" of his produce through the years, some agrarian experts have been experimenting with indoor cultivation of the crop as global warming fears increase.

About 90% of India's saffron is produced in Kashmir, of which a majority is grown in Pampore, but the small town is under threat of rapid urbanization, according to the Indian Council of Scientific & Industrial Research (CSIR).

Experts say rising temperatures and erratic rainfall pose a risk to saffron production, which has dropped from 8 metric tons in the financial year 2010-11 to 2.6 metric tons in 2023-24, the federal government told parliament in February, adding that efforts were being made to boost production.

One such program is a project to help grow the plant indoors in a controlled environment in tubes containing moisture and vital nutrients, which Dr. Bashir Ilahi at state-run Sher-e-Kashmir University of Agricultural Sciences said has shown good results.

"Growing saffron in a controlled environment demonstrates temperature resistance and significantly reduces the risk of crop failure," said Ilahi, standing in his laboratory between stacks of crates containing tubes of the purple flower.

Ilahi and other local experts have been helping farmers with demonstrations on how to grow the crocus plant indoors.

"It is an amazing innovation," said Abdul Majeed, president of Kashmir's Saffron Growers Association, some of whose members, including Majeed, have been cultivating the crop indoors for a few years.

Manzoor Ahmad Mir, a saffron grower, urged more state support.

"The government should promote indoor saffron cultivation on a much larger scale as climate change is affecting the entire world, and Kashmir is no exception," Mir said.